Difference between revisions of "Template:Codon table"
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− | {| class="wikitable" | + | {| class="wikitable" style="border:none; background:none; text-align:center;" |
− | | | + | | [[Amino acids|Amino-acid]] biochemical properties |
− | | | + | | style="background-color:#ffe75f; width: 50px;" | Nonpolar |
− | | | + | | style="background-color:#b3dec0; width: 50px;" | Polar |
− | | | + | | style="background-color:#bbbfe0; width: 50px;" | Basic |
− | | | + | | style="background-color:#f8b7d3; width: 50px;" | Acidic |
+ | | style="border:none; background:none; width: 100px;" | | ||
+ | | style="background-color:#B0B0B0;" | Termination: stop codon | ||
|} | |} | ||
{| class="wikitable" | {| class="wikitable" | ||
|+ Standard genetic code | |+ Standard genetic code | ||
− | !rowspan=2| 1st<br/>base | + | ! rowspan=2 | 1st<br/>base |
− | !colspan=8| 2nd base | + | ! colspan=8 | 2nd base |
− | !rowspan=2| 3rd<br/>base | + | ! rowspan=2 | 3rd<br/>base |
|- | |- | ||
− | !colspan=2| {{{T|T}}} | + | ! colspan=2 style="width:150px;" | {{{T|T}}} |
− | !colspan=2| C | + | ! colspan=2 style="width:150px;" | C |
− | !colspan=2| A | + | ! colspan=2 style="width:150px;" | A |
− | !colspan=2| G | + | ! colspan=2 style="width:150px;" | G |
+ | |||
|- | |- | ||
− | + | ! rowspan=4 | {{{T|T}}} | |
− | !rowspan=4| {{{T|T}}} | ||
| {{{T|T}}}{{{T|T}}}{{{T|T}}} | | {{{T|T}}}{{{T|T}}}{{{T|T}}} | ||
− | | | + | |rowspan=2 style="background-color:#ffe75f" | (Phe/F) [[Phenylalanine]] |
| {{{T|T}}}C{{{T|T}}} | | {{{T|T}}}C{{{T|T}}} | ||
− | | | + | |rowspan=4 style="background-color:#b3dec0" | (Ser/S) [[Serine]] |
| {{{T|T}}}A{{{T|T}}} | | {{{T|T}}}A{{{T|T}}} | ||
− | | | + | |rowspan=2 style="background-color:#b3dec0" | (Tyr/Y) [[Tyrosine]] |
| {{{T|T}}}G{{{T|T}}} | | {{{T|T}}}G{{{T|T}}} | ||
− | | | + | |rowspan=2 style="background-color:#b3dec0" | (Cys/C) [[Cysteine]] |
! {{{T|T}}} | ! {{{T|T}}} | ||
|- | |- | ||
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|- | |- | ||
| {{{T|T}}}{{{T|T}}}A | | {{{T|T}}}{{{T|T}}}A | ||
− | | | + | |rowspan=6 style="background-color:#ffe75f" | (Leu/L) [[Leucine]] |
| {{{T|T}}}CA | | {{{T|T}}}CA | ||
| {{{T|T}}}AA | | {{{T|T}}}AA | ||
− | | | + | | style="background-color:#B0B0B0;" | [[Stop codon|Stop]] (''Ochre''){{Ref label|stopcodon1|B|none}} |
| {{{T|T}}}GA | | {{{T|T}}}GA | ||
− | | | + | | style="background-color:#B0B0B0;" | [[Stop codon|Stop]] (''Opal''){{Ref label|stopcodon2|B|none}} |
! A | ! A | ||
|- | |- | ||
− | | {{{T|T}}}{{{T|T}}}G | + | | {{{T|T}}}{{{T|T}}}G{{ref label|start|A|A}} |
| {{{T|T}}}CG | | {{{T|T}}}CG | ||
| {{{T|T}}}AG | | {{{T|T}}}AG | ||
− | | | + | | style="background-color:#B0B0B0;" | [[Stop codon|Stop]] (''Amber''){{Ref label|stopcodon3|B|none}} |
| {{{T|T}}}GG | | {{{T|T}}}GG | ||
− | | | + | | style="background-color:#ffe75f;" | (Trp/W) [[Tryptophan]] |
! G | ! G | ||
|- | |- | ||
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| C{{{T|T}}}{{{T|T}}} | | C{{{T|T}}}{{{T|T}}} | ||
| CC{{{T|T}}} | | CC{{{T|T}}} | ||
− | | | + | |rowspan=4 style="background-color:#ffe75f" | (Pro/P) [[Proline]] |
| CA{{{T|T}}} | | CA{{{T|T}}} | ||
− | | | + | |rowspan=2 style="background-color:#bbbfe0" | (His/H) [[Histidine]] |
|CG{{{T|T}}} | |CG{{{T|T}}} | ||
− | | | + | |rowspan=4 style="background-color:#bbbfe0" | (Arg/R) [[Arginine]] |
! {{{T|T}}} | ! {{{T|T}}} | ||
|- | |- | ||
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|CCA | |CCA | ||
|CAA | |CAA | ||
− | | | + | |rowspan=2 style="background-color:#b3dec0" | (Gln/Q) [[Glutamine]] |
|CGA | |CGA | ||
! A | ! A | ||
|- | |- | ||
− | |C{{{T|T}}}G | + | |C{{{T|T}}}G{{ref label|start|A|A}} |
|CCG | |CCG | ||
|CAG | |CAG | ||
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! rowspan="4" | A | ! rowspan="4" | A | ||
|A{{{T|T}}}{{{T|T}}} | |A{{{T|T}}}{{{T|T}}} | ||
− | | | + | |rowspan=3 style="background-color:#ffe75f" | (Ile/I) [[Isoleucine]] |
|AC{{{T|T}}} | |AC{{{T|T}}} | ||
− | | | + | |rowspan=4 style="background-color:#b3dec0" | (Thr/T) [[Threonine]] |
|AA{{{T|T}}} | |AA{{{T|T}}} | ||
− | | | + | |rowspan=2 style="background-color:#b3dec0" | (Asn/N) [[Asparagine]] |
|AG{{{T|T}}} | |AG{{{T|T}}} | ||
− | | | + | |rowspan=2 style="background-color:#b3dec0" | (Ser/S) [[Serine]] |
! {{{T|T}}} | ! {{{T|T}}} | ||
|- | |- | ||
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|ACA | |ACA | ||
|AAA | |AAA | ||
− | | | + | |rowspan=2 style="background-color:#bbbfe0" | (Lys/K) [[Lysine]] |
|AGA | |AGA | ||
− | | | + | |rowspan=2 style="background-color:#bbbfe0" | (Arg/R) [[Arginine]] |
! A | ! A | ||
|- | |- | ||
− | |A{{{T|T}}}G{{ref label| | + | |A{{{T|T}}}G{{ref label|start|A|A}} |
− | | | + | | style="background-color:#ffe75f;" | (Met/M) [[Methionine]] |
|ACG | |ACG | ||
|AAG | |AAG | ||
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! rowspan="4" | G | ! rowspan="4" | G | ||
|G{{{T|T}}}{{{T|T}}} | |G{{{T|T}}}{{{T|T}}} | ||
− | | | + | |rowspan=4 style="background-color:#ffe75f" | (Val/V) [[Valine]] |
|GC{{{T|T}}} | |GC{{{T|T}}} | ||
− | | | + | |rowspan=4 style="background-color:#ffe75f" | (Ala/A) [[Alanine]] |
|GA{{{T|T}}} | |GA{{{T|T}}} | ||
− | | | + | |rowspan=2 style="background-color:#f8b7d3" | (Asp/D) [[Aspartic acid]] |
|GG{{{T|T}}} | |GG{{{T|T}}} | ||
− | | | + | |rowspan=4 style="background-color:#ffe75f" | (Gly/G) [[Glycine]] |
! {{{T|T}}} | ! {{{T|T}}} | ||
|- | |- | ||
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|GCA | |GCA | ||
|GAA | |GAA | ||
− | | | + | |rowspan=2 style="background-color:#f8b7d3" | (Glu/E) [[Glutamic acid]] |
|GGA | |GGA | ||
! A | ! A | ||
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|- | |- | ||
|} | |} | ||
− | + | :{{note label|start|A|A}} The codon A{{{T|T}}}G both codes for methionine and serves as an initiation site: the first A{{{T|T}}}G in an [[mRNA]]'s coding region is where translation into protein begins.<ref name="pmid19056476">{{cite journal |author=Nakamoto T |title=Evolution and the universality of the mechanism of initiation of protein synthesis |journal=Gene |volume=432 |issue=1–2 |pages=1–6 | date=March 2009 |pmid=19056476 |doi=10.1016/j.gene.2008.11.001}}</ref> The other start codons listed by GenBank are rare in eukaryotes and generally codes for Met/fMet.<ref>{{Cite journal| last7 = Collado-Vides | first9 = C. K. | first8 = J. D. | first7 = J.| last10 = Mayhew| title = The Complete Genome Sequence of Escherichia coli K-12 | first17 = Y.| last17 = Shao | first16 = B.| last16 = Mau | first15 = D. J.| last15 = Rose | first14 = M. A.| last14 = Goeden | first13 = H. A.| last13 = Kirkpatrick | first12 = N. W.| last12 = Davis | first11 = J.| journal = Science| last11 = Gregor| doi = 10.1126/science.277.5331.1453 | first10 = G. F.| pmid = 9278503| year = 1997| pages = 1453–1462| volume = 277| issue = 5331 | first6 = M. | first2 = G.| last9 = Rode | first3 = C. A.| last2 = Plunkett g| last4 = Perna | first1 = F. R.| last6 = Riley| last5 = Burland| last1 = Blattner| last8 = Glasner | first5 = V. | first4 = N. T.| last3 = Bloch }}</ref> | |
− | :{{note label| | + | : '''<sup>B</sup>''' {{Note label|stopcodon1|3=none}}{{Note label|stopcodon2|3=none}}{{Note label|stopcodon3|3=none}} The historical basis for designating the [[stop codon#Nomenclature|stop codons as amber, ochre and opal]] is described in an autobiography by Sydney Brenner<ref>Brenner S. A Life in Science (2001) Published by Biomed Central Limited {{ISBN|0-9540278-0-9}} see pages 101-104</ref> and in a historical article by Bob Edgar.<ref name="pmid15514035">{{cite journal |vauthors=Edgar B |title=The genome of bacteriophage T4: an archeological dig |journal=Genetics |volume=168 |issue=2 |pages=575–82 |year=2004 |pmid=15514035 |pmc=1448817 |doi= |url=}} see pages 580-581</ref><noinclude> |
− | |||
{{documentation|content=This is the standard or universal [[genetic code]]. | {{documentation|content=This is the standard or universal [[genetic code]]. | ||
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<references/> | <references/> | ||
+ | |||
+ | [[Category:Biochemistry templates]] | ||
}} | }} | ||
+ | </noinclude> |
Latest revision as of 21:19, 22 April 2020
Amino-acid biochemical properties | Nonpolar | Polar | Basic | Acidic | Termination: stop codon |
1st base |
2nd base | 3rd base | |||||||
---|---|---|---|---|---|---|---|---|---|
T | C | A | G | ||||||
T | TTT | (Phe/F) Phenylalanine | TCT | (Ser/S) Serine | TAT | (Tyr/Y) Tyrosine | TGT | (Cys/C) Cysteine | T |
TTC | TCC | TAC | TGC | C | |||||
TTA | (Leu/L) Leucine | TCA | TAA | Stop (Ochre)Template:Ref label | TGA | Stop (Opal)Template:Ref label | A | ||
TTGTemplate:Ref label | TCG | TAG | Stop (Amber)Template:Ref label | TGG | (Trp/W) Tryptophan | G | |||
C | CTT | CCT | (Pro/P) Proline | CAT | (His/H) Histidine | CGT | (Arg/R) Arginine | T | |
CTC | CCC | CAC | CGC | C | |||||
CTA | CCA | CAA | (Gln/Q) Glutamine | CGA | A | ||||
CTGTemplate:Ref label | CCG | CAG | CGG | G | |||||
A | ATT | (Ile/I) Isoleucine | ACT | (Thr/T) Threonine | AAT | (Asn/N) Asparagine | AGT | (Ser/S) Serine | T |
ATC | ACC | AAC | AGC | C | |||||
ATA | ACA | AAA | (Lys/K) Lysine | AGA | (Arg/R) Arginine | A | |||
ATGTemplate:Ref label | (Met/M) Methionine | ACG | AAG | AGG | G | ||||
G | GTT | (Val/V) Valine | GCT | (Ala/A) Alanine | GAT | (Asp/D) Aspartic acid | GGT | (Gly/G) Glycine | T |
GTC | GCC | GAC | GGC | C | |||||
GTA | GCA | GAA | (Glu/E) Glutamic acid | GGA | A | ||||
GTG | GCG | GAG | GGG | G |
- Template:Note label The codon ATG both codes for methionine and serves as an initiation site: the first ATG in an mRNA's coding region is where translation into protein begins.[1] The other start codons listed by GenBank are rare in eukaryotes and generally codes for Met/fMet.[2]
- B Template:Note labelTemplate:Note labelTemplate:Note label The historical basis for designating the stop codons as amber, ochre and opal is described in an autobiography by Sydney Brenner[3] and in a historical article by Bob Edgar.[4]

This is the standard or universal genetic code.
This table is found in both DNA Codon Table and Genetic Code (And probably a few other places), so I'm pulling it out so it can be common. By default it's the DNA code (using the letter T for Thymine); use template parameter "T=U" to make it the RNA code (using U for Uracil). See also Template:Inverse codon table.
- ↑ Nakamoto T (March 2009). "Evolution and the universality of the mechanism of initiation of protein synthesis". Gene. 432 (1–2): 1–6. doi:10.1016/j.gene.2008.11.001. PMID 19056476.
- ↑ Blattner, F. R.; Plunkett g, G.; Bloch, C. A.; Perna, N. T.; Burland, V.; Riley, M.; Collado-Vides, J.; Glasner, J. D.; Rode, C. K.; Mayhew, G. F.; Gregor, J.; Davis, N. W.; Kirkpatrick, H. A.; Goeden, M. A.; Rose, D. J.; Mau, B.; Shao, Y. (1997). "The Complete Genome Sequence of Escherichia coli K-12". Science. 277 (5331): 1453–1462. doi:10.1126/science.277.5331.1453. PMID 9278503.
- ↑ Brenner S. A Life in Science (2001) Published by Biomed Central Limited ISBN 0-9540278-0-9 see pages 101-104
- ↑ Edgar B (2004). "The genome of bacteriophage T4: an archeological dig". Genetics. 168 (2): 575–82. PMC 1448817. PMID 15514035. see pages 580-581
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